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Index
A
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B
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C
|
D
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E
|
F
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G
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H
|
I
|
L
|
M
|
O
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P
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Q
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R
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S
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T
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U
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W
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X
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Y
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Z
A
acqID (bstore.database.DatasetID attribute)
AddColumn (class in bstore.processors)
aduOffset (bstore.multiprocessors.EstimatePhotons attribute)
AlignToWidefield (class in bstore.multiprocessors)
annotateCol (bstore.multiprocessors.OverlayClusters attribute)
astigmatismComputer (bstore.processors.CalibrateAstigmatism attribute)
attributeOf (bstore.database.Dataset attribute)
(bstore.database.DatasetID attribute)
attrPrefix (bstore.database.HDFDatastore attribute)
autoFindMergeRadius (bstore.processors.Merge attribute)
avgSpline (bstore.processors.DefaultDriftComputer attribute)
B
BatchProcessor (class in bstore.batch)
bgCorrect (bstore.multiprocessors.EstimatePhotons attribute)
bgMaskSize (bstore.multiprocessors.EstimatePhotons attribute)
bstore (module)
bstore.batch (module)
bstore.config (module)
bstore.database (module)
bstore.multiprocessors (module)
bstore.parsers (module)
bstore.processors (module)
build() (bstore.database.Datastore method)
(bstore.database.HDFDatastore method)
C
CalibrateAstigmatism (class in bstore.processors)
calibrationCurves (bstore.processors.CalibrateAstigmatism attribute)
cameraGain (bstore.multiprocessors.EstimatePhotons attribute)
centerName (bstore.processors.ComputeClusterStats attribute)
channelID (bstore.database.DatasetID attribute)
CleanUp (class in bstore.processors)
clearRegionLocs() (bstore.processors.ComputeTrajectories method)
Cluster (class in bstore.processors)
clusterIDCol (bstore.multiprocessors.OverlayClusters attribute)
columnName (bstore.processors.AddColumn attribute)
combineCurves() (bstore.processors.DefaultAstigmatismComputer method)
(bstore.processors.DefaultDriftComputer method)
ComputeClusterStats (class in bstore.processors)
computeStatistics() (bstore.processors.MergeFang method)
(bstore.processors.MergeFangTS method)
(bstore.processors.MergeStats method)
ComputeTrajectories (class in bstore.processors)
computeTrajectory() (bstore.processors.ComputeTrajectories method)
(bstore.processors.DefaultAstigmatismComputer method)
(bstore.processors.DefaultDriftComputer method)
ComputeZPosition (class in bstore.processors)
ConvertHeader (class in bstore.processors)
coordCenterCols (bstore.multiprocessors.OverlayClusters attribute)
coordCols (bstore.multiprocessors.AlignToWidefield attribute)
(bstore.multiprocessors.OverlayClusters attribute)
(bstore.processors.DefaultDriftComputer attribute)
(bstore.processors.Merge attribute)
correctLocalizations() (bstore.processors.DriftCorrect method)
(bstore.processors.FiducialDriftCorrect method)
correctorType (bstore.processors.DriftCorrect attribute)
,
[1]
(bstore.processors.FiducialDriftCorrect attribute)
CSVBatchProcessor (class in bstore.batch)
currentCluster (bstore.multiprocessors.OverlayClusters attribute)
D
data (bstore.database.Dataset attribute)
,
[1]
dataset (bstore.parsers.Parser attribute)
,
[1]
Dataset (class in bstore.database)
DatasetID (class in bstore.database)
DatasetIDError
datasetIDs (bstore.database.Dataset attribute)
,
[1]
datasetList (bstore.batch.BatchProcessor attribute)
(bstore.batch.CSVBatchProcessor attribute)
,
[1]
(bstore.batch.HDFBatchProcessor attribute)
datasetType (bstore.database.Dataset attribute)
(bstore.database.DatasetID attribute)
DatasetTypeError
,
[1]
Datastore (class in bstore.database)
dateID (bstore.database.DatasetID attribute)
DefaultAstigmatismComputer (class in bstore.processors)
DefaultDriftComputer (class in bstore.processors)
defaultValue (bstore.processors.AddColumn attribute)
doInteractiveSearch() (bstore.processors.SelectLocalizations method)
driftComputer (bstore.processors.FiducialDriftCorrect attribute)
DriftCorrect (class in bstore.processors)
driftTrajectory (bstore.processors.DriftCorrect attribute)
,
[1]
(bstore.processors.FiducialDriftCorrect attribute)
E
EstimatePhotons (class in bstore.multiprocessors)
F
FiducialDriftCorrect (class in bstore.processors)
FileNotLocked
Filter (class in bstore.processors)
filterCol (bstore.multiprocessors.OverlayClusters attribute)
fitCurves() (bstore.processors.DefaultAstigmatismComputer method)
(bstore.processors.DefaultDriftComputer method)
FormatMap (class in bstore.parsers)
frameCol (bstore.processors.DefaultDriftComputer attribute)
G
get() (bstore.database.Dataset method)
(bstore.database.Datastore method)
(bstore.database.HDFDatastore method)
go() (bstore.batch.BatchProcessor method)
(bstore.batch.CSVBatchProcessor method)
(bstore.batch.HDFBatchProcessor method)
gui() (bstore.parsers.PositionParser method)
H
HDF5KeyDoesNotExist
HDF5KeyExists
HDFBatchProcessor (class in bstore.batch)
HDFDatastore (class in bstore.database)
hdfLockCheck() (in module bstore.database)
I
interactiveSearch (bstore.processors.CalibrateAstigmatism attribute)
(bstore.processors.FiducialDriftCorrect attribute)
L
LocResultsDoNotExist
M
mapping (bstore.processors.ConvertHeader attribute)
maxRadius (bstore.processors.DefaultDriftComputer attribute)
Merge (class in bstore.processors)
MergeFang (class in bstore.processors)
MergeFangTS (class in bstore.processors)
mergeRadius (bstore.processors.Merge attribute)
MergeStats (class in bstore.processors)
O
OverlayClusters (class in bstore.multiprocessors)
P
parseFilename() (bstore.parsers.Parser method)
(bstore.parsers.PositionParser method)
(bstore.parsers.SimpleParser method)
ParseFilenameFailure
Parser (class in bstore.parsers)
ParserNotInitializedError
pipeLine (bstore.batch.CSVBatchProcessor attribute)
pixelSize (bstore.multiprocessors.AlignToWidefield attribute)
(bstore.multiprocessors.OverlayClusters attribute)
plotBeads() (bstore.processors.DefaultAstigmatismComputer method)
plotFiducials() (bstore.processors.DefaultDriftComputer method)
posID (bstore.database.DatasetID attribute)
positionIDs (bstore.parsers.PositionParser attribute)
PositionParser (class in bstore.parsers)
pp (in module bstore.database)
precisionColumn (bstore.processors.Merge attribute)
prefix (bstore.database.DatasetID attribute)
ProcessedFolderExists
put() (bstore.database.Dataset method)
(bstore.database.Datastore method)
(bstore.database.HDFDatastore method)
Q
query() (bstore.database.Datastore method)
(bstore.database.HDFDatastore method)
R
readFromFile() (bstore.database.Dataset method)
readSettings() (bstore.processors.DriftCorrect method)
(bstore.processors.FiducialDriftCorrect method)
regionLocs (bstore.processors.ComputeTrajectories attribute)
,
[1]
(bstore.processors.DefaultDriftComputer attribute)
replicateID (bstore.database.DatasetID attribute)
requiresConfig (bstore.parsers.Parser attribute)
,
[1]
(bstore.parsers.PositionParser attribute)
,
[1]
(bstore.parsers.SimpleParser attribute)
,
[1]
reset() (bstore.processors.ComputeTrajectories method)
(bstore.processors.DefaultAstigmatismComputer method)
(bstore.processors.DefaultDriftComputer method)
S
SearchDirectoryDoesNotExist
SelectLocalizations (class in bstore.processors)
sep (bstore.parsers.PositionParser attribute)
setup (module)
showAll (bstore.multiprocessors.OverlayClusters attribute)
SimpleParser (class in bstore.parsers)
sliceID (bstore.database.DatasetID attribute)
smoothingFilterSize (bstore.processors.DefaultDriftComputer attribute)
smoothingWindowSize (bstore.processors.DefaultDriftComputer attribute)
splines (bstore.processors.DefaultDriftComputer attribute)
spotMaskRadius (bstore.multiprocessors.EstimatePhotons attribute)
statsComputer (bstore.processors.Merge attribute)
T
tOff (bstore.processors.Merge attribute)
U
upsampleFactor (bstore.multiprocessors.AlignToWidefield attribute)
useTrajectories (bstore.processors.DefaultDriftComputer attribute)
UseTrajectoryError
W
widefieldPixelSize (bstore.database.HDFDatastore attribute)
wobbleCurves (bstore.processors.CalibrateAstigmatism attribute)
writeSettings() (bstore.processors.DriftCorrect method)
(bstore.processors.FiducialDriftCorrect method)
X
xShift (bstore.multiprocessors.OverlayClusters attribute)
Y
yShift (bstore.multiprocessors.OverlayClusters attribute)
Z
ZeroFiducialRegions
zeroFrame (bstore.processors.DefaultDriftComputer attribute)
ZeroRegions
zoomSize (bstore.multiprocessors.OverlayClusters attribute)
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